Fix stack overflow in MergeBaseGenerator

Some repository topologies can cause carryOntoHistory to overflow the
thread stack, due to its strategy of recursing into the 2nd+ parents
of a merge commit.  This can easily happen if a project maintains a
local fork, and frequently pulls from the upstream repository, which
itself may have a branchy history.

Rewrite the carryOntoHistory algorithm to use a fixed amount of thread
stack, pushing the save points onto the heap.  By using heap space the
thread stack depth is no longer a concern.  Repositories are instead
limited by available memory.

The algorithm is now structured as two loops:

  carryOntoHistory: This outer loop pops saved commits off the top of
  the stack, allowing the inner loop algorithm to dive down that path
  and carry bits onto commits along that part of the graph.  The loop
  ends when there are no more stack elements.

  carryOntoHistoryInner: The inner loop walks along a single path of
  the graph. For a string of pearls (commits with one parent each)

    r <- s <- t <- u

  the algorithm walks backwards from u to r by iteratively updating
  its local variable 'c'.  This avoids heap allocation along a simple
  path that does not require remembering state.

  The inner loop breaks in the HAVE_ALL case, when all bits have been
  found to be previously set on the commit.  This occurs when a prior
  iteration of the outer loop (carryOntoHistory) explored a different
  path to this same commit, and copied the bits onto it.

  When the inner loop encounters a merge commit, it pushes all parents
  onto the heap based stack by allocating individual CarryStack
  elements for each parent.  Parents are pushed in order, allowing
  side branches to be explored first.

  A small optimization is taken for the last parent, avoiding pushing
  it and instead updating 'c', allowing the side branch to be entered
  without allocating a CarryStack.

Change-Id: Ib7b67d90f141c497fbdc61a31b0caa832e4b3c04
1 file changed
tree: 12cdd74ac6d99754117c2ef00bfa49789e919557
  1. .mvn/
  2. lib/
  3. org.eclipse.jgit/
  4. org.eclipse.jgit.ant/
  5. org.eclipse.jgit.ant.test/
  6. org.eclipse.jgit.archive/
  7. org.eclipse.jgit.http.apache/
  8. org.eclipse.jgit.http.server/
  9. org.eclipse.jgit.http.test/
  10. org.eclipse.jgit.junit/
  11. org.eclipse.jgit.junit.http/
  12. org.eclipse.jgit.lfs/
  13. org.eclipse.jgit.lfs.server/
  14. org.eclipse.jgit.lfs.server.test/
  15. org.eclipse.jgit.lfs.test/
  16. org.eclipse.jgit.packaging/
  17. org.eclipse.jgit.pgm/
  18. org.eclipse.jgit.pgm.test/
  19. org.eclipse.jgit.test/
  20. org.eclipse.jgit.ui/
  21. tools/
  22. .gitattributes
  23. .gitignore
  24. .mailmap
  25. BUILD
  26. CONTRIBUTING.md
  27. LICENSE
  28. pom.xml
  29. README.md
  30. WORKSPACE
README.md

Java Git

An implementation of the Git version control system in pure Java.

This package is licensed under the EDL (Eclipse Distribution License).

JGit can be imported straight into Eclipse, built and tested from there, but the automated builds use Maven.

  • org.eclipse.jgit

    A pure Java library capable of being run standalone, with no additional support libraries. It provides classes to read and write a Git repository and operate on a working directory.

    All portions of JGit are covered by the EDL. Absolutely no GPL, LGPL or EPL contributions are accepted within this package.

  • org.eclipse.jgit.ant

    Ant tasks based on JGit.

  • org.eclipse.jgit.archive

    Support for exporting to various archive formats (zip etc).

  • org.eclipse.jgit.http.apache

    Apache httpclient support

  • org.eclipse.jgit.http.server

    Server for the smart and dumb Git HTTP protocol.

  • org.eclipse.jgit.pgm

    Command-line interface Git commands implemented using JGit (“pgm” stands for program).

  • org.eclipse.jgit.packaging

    Production of Eclipse features and p2 repository for JGit. See the JGit Wiki on why and how to use this module.

Tests

  • org.eclipse.jgit.junit

    Helpers for unit testing

  • org.eclipse.jgit.test

    Unit tests for org.eclipse.jgit

  • org.eclipse.jgit.ant.test

  • org.eclipse.jgit.pgm.test

  • org.eclipse.jgit.http.test

  • org.eclipse.jgit.junit.test

    No further description needed

Warnings/Caveats

  • Native smbolic links are supported, provided the file system supports them. For Windows you must have Windows Vista/Windows 2008 or newer, use a non-administrator account and have the SeCreateSymbolicLinkPrivilege.

  • Only the timestamp of the index is used by jgit if the index is dirty.

  • JGit requires at least a Java 8 JDK.

  • CRLF conversion is performed depending on the core.autocrlf setting, however Git for Windows by default stores that setting during installation in the “system wide” configuration file. If Git is not installed, use the global or repository configuration for the core.autocrlf setting.

  • The system wide configuration file is located relative to where C Git is installed. Make sure Git can be found via the PATH environment variable. When installing Git for Windows check the “Run Git from the Windows Command Prompt” option. There are other options like Eclipse settings that can be used for pointing out where C Git is installed. Modifying PATH is the recommended option if C Git is installed.

  • We try to use the same notation of $HOME as C Git does. On Windows this is often not the same value as the user.home system property.

Package Features

  • org.eclipse.jgit/

    • Read loose and packed commits, trees, blobs, including deltafied objects.

    • Read objects from shared repositories

    • Write loose commits, trees, blobs.

    • Write blobs from local files or Java InputStreams.

    • Read blobs as Java InputStreams.

    • Copy trees to local directory, or local directory to a tree.

    • Lazily loads objects as necessary.

    • Read and write .git/config files.

    • Create a new repository.

    • Read and write refs, including walking through symrefs.

    • Read, update and write the Git index.

    • Checkout in dirty working directory if trivial.

    • Walk the history from a given set of commits looking for commits introducing changes in files under a specified path.

    • Object transport Fetch via ssh, git, http, Amazon S3 and bundles. Push via ssh, git and Amazon S3. JGit does not yet deltify the pushed packs so they may be a lot larger than C Git packs.

    • Garbage collection

    • Merge

    • Rebase

    • And much more

  • org.eclipse.jgit.pgm/

    • Assorted set of command line utilities. Mostly for ad-hoc testing of jgit log, glog, fetch etc.
  • org.eclipse.jgit.ant/

    • Ant tasks
  • org.eclipse.jgit.archive/

    • Support for Zip/Tar and other formats
  • org.eclipse.http.*/

    • HTTP client and server support

Missing Features

There are some missing features:

  • gitattributes support

Support

Post question, comments or patches to the jgit-dev@eclipse.org mailing list. You need to be subscribed to post, see here:

https://dev.eclipse.org/mailman/listinfo/jgit-dev

Contributing

See the EGit Contributor Guide:

http://wiki.eclipse.org/EGit/Contributor_Guide

About Git

More information about Git, its repository format, and the canonical C based implementation can be obtained from the Git website:

http://git-scm.com/