commit-graph: pass a 'struct repository *' in more places

In a future commit, some commit-graph internals will want access to
'r->settings', but we only have the 'struct object_directory *'
corresponding to that repository.

Add an additional parameter to pass the repository around in more
places.

Signed-off-by: Taylor Blau <me@ttaylorr.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
diff --git a/builtin/commit-graph.c b/builtin/commit-graph.c
index 523501f..ba55844 100644
--- a/builtin/commit-graph.c
+++ b/builtin/commit-graph.c
@@ -106,7 +106,7 @@ static int graph_verify(int argc, const char **argv)
 	FREE_AND_NULL(graph_name);
 
 	if (open_ok)
-		graph = load_commit_graph_one_fd_st(fd, &st, odb);
+		graph = load_commit_graph_one_fd_st(the_repository, fd, &st, odb);
 	else
 		graph = read_commit_graph_one(the_repository, odb);